朱书礼, 李新辉, 杨计平, 李跃飞, 李捷, 帅方敏, 李琳. 草鱼-淀粉酶基因5,侧翼序列克隆与分析[J]. 南方水产科学, 2014, 10(5): 87-93. DOI: 10.3969/j.issn.2095-0780.2014.05.013
引用本文: 朱书礼, 李新辉, 杨计平, 李跃飞, 李捷, 帅方敏, 李琳. 草鱼-淀粉酶基因5,侧翼序列克隆与分析[J]. 南方水产科学, 2014, 10(5): 87-93. DOI: 10.3969/j.issn.2095-0780.2014.05.013
ZHU Shuli, LI Xinhui, YANG Jiping, LI Yuefei, LI Jie, SHUAI Fangmin, LI Lin. Cloning and analysis of 5' flanking sequence of -amylase gene from Ctenopharyngodon idellus[J]. South China Fisheries Science, 2014, 10(5): 87-93. DOI: 10.3969/j.issn.2095-0780.2014.05.013
Citation: ZHU Shuli, LI Xinhui, YANG Jiping, LI Yuefei, LI Jie, SHUAI Fangmin, LI Lin. Cloning and analysis of 5' flanking sequence of -amylase gene from Ctenopharyngodon idellus[J]. South China Fisheries Science, 2014, 10(5): 87-93. DOI: 10.3969/j.issn.2095-0780.2014.05.013

草鱼-淀粉酶基因5,侧翼序列克隆与分析

Cloning and analysis of 5' flanking sequence of -amylase gene from Ctenopharyngodon idellus

  • 摘要: 应用PCR和Genome Walking技术克隆获得长度为168 bp的草鱼(Ctenopharyngodon idellus)-淀粉酶基因外显子Ⅰ序列和2 063 bp的5'侧翼序列。将草鱼-淀粉酶基因外显子Ⅰ序列与已知几种鱼类-淀粉酶基因外显子Ⅰ序列比对,相似度为68%~86%。将草鱼-淀粉酶基因5'侧翼序列进行生物信息学分析,确定了其转录起始区域及转录起始位点(TSS);在TSS上游30 bp处有1个TATA-box,-58 bp处有CCAAT-box;在5'侧翼序列中还发现有GATA-1、OCT-1、GR、HNF-3、AP1和SP1等转录因子结合位点。草鱼-淀粉酶基因5' 侧翼序列的克隆,为进一步研究不同食性鱼类-淀粉酶基因侧翼序列的差异、鱼类-淀粉酶基因的表达、功能及调控机理奠定基础。

     

    Abstract: PCR and Genome Walking methods were applied to obtain a 168 bp -amylase gene exonⅠsequence and a 2 063 bp -amylase gene 5' flanking sequence from grass carp (Ctenopharyngodon idellus). The sequence alignment of -amylase gene exon Ⅰ between grass carp and other fishes showed that the similarity was 68%~86%. The sequence analysis of -amylase gene 5' flanking sequence of grass carp confirmed a transcription initiation region anda transcriptional start site (TSS). There were a TATA-box at 30 bp and a CAAT-box at58 bp. There were some transcriptional factor binding sites in the -amylase gene 5' flanking sequence, such as GATA-1, OCT-1, GR, HNF-3, AP1 and SP1. The -amylase gene 5' flanking sequence of grass carp was cloned successfully, which provides references for studies on differences of -amylase gene 5' flanking sequence amongdifferent feeding fishes, as well as on the expression, function and regulation mechanism of -amylase gene in fishes.

     

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