基于全长转录组解析波纹龙虾肝胰腺分泌蛋白特征及几丁质酶多样性

Characterization of secreted proteins and chitinase diversity in hepatopancreas of Panulirus homarus based on full-length transcriptome analysis

  • 摘要: 肝胰腺的分泌功能在甲壳类动物消化、蜕皮及免疫等关键养殖生理过程中发挥核心作用。但关于波纹龙虾 (Panulirus homarus) 肝胰腺分泌功能的研究十分有限,一定程度上制约了其养殖技术的提升与应用。为系统解析波纹龙虾肝胰腺的分泌功能并重点阐明其几丁质酶家族的形成机制与特征,本研究基于全长转录组测序技术,结合信号肽预测策略,对其肝胰腺的分泌功能进行系统解析,对其中多样性最高的几丁质酶家族的形成机制与特征进行了深入分析,共获得9 163个unigene,分别在NR、GO、KEGG、eggNOG和Swiss-Prot数据库中注释到7 838、6 432、5 072、6 787和7 021个unigene。结果显示,波纹龙虾肝胰腺分泌蛋白主要涉及信号转导、信号分子与受体相互作用、消化系统、免疫系统、内分泌系统、各种营养代谢等典型的分泌功能通路。涉及代谢通路的分泌蛋白数量最多,且最终鉴定出I类21个,II类和III类各6个几丁质酶转录本;几丁质酶突变多集中于蛋白质序列的第350位之后。研究结果可为波纹龙虾在饲料开发、免疫调控、疾病防控及蜕皮调控等涉及肝胰腺分泌的功能研究及其养殖技术发展提供理论基础。

     

    Abstract: The secretory function of the hepatopancreas plays a central role in key physiological processes related to aquaculture in crustaceans, including digestion, molting, and immunity. However, studies on the hepatopancreatic secretory function of the Scalloped spiny lobster (Panulirus homarus) remain scarce, which to some extent has constrained advances in its culture techniques. To systematically analyze the secretory functions of P. homarus hepatopancreas and elucidate the formation mechanisms and characteristics of its chitinase family, based on full-length transcriptome sequencing combined with signal peptide prediction, we systematically analyzed the secretory function of the hepatopancreas and conducted an in-depth investigation into the formation mechanism and characteristics of the chitinase family, which exhibited the highest diversity. A total of 9 163 unigenes were obtained, among which 7 838, 6 432, 5 072, 6 787, and 7 021 unigenes were annotated in the NR, GO, KEGG, eggNOG, and Swiss-Prot databases, respectively. The results indicate that the the secreted proteins of P. homarus hepatopancreas are primarily involved in typical secretory functional pathways such as include signal transduction, signaling molecules and interaction, digestive system, immune system, endocrine system, and various nutritional metabolic processes. The largest number of secretory proteins was obtained during the identification of metabolic pathways, and a total of 21 Class I, and 6 Class II and III chitinases transcripts are ultimately identified. Analysis of the chitinases shows that the variations mainly localised after the 350 position in the protein sequence. This study provides a theoretical foundation for functional research on hepatopancreatic secretion in P. homarus, and supports the development of its aquaculture technologies in areas such as feed formulation, immune regulation, disease prevention, and molting control.

     

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